1 HOK comparison of CASAL and Casal2 model configurations

This document compares the results of at least 2 CASAL model configurations (base and at least one sensitivity) and up to 6 Casal2 model configurations (3 BetaDiff and 3 ADOL-C).

The CASAL model sensitivity 1 has a smaller minimisation tolerance value than the CASAL base model (1e-9 vs. 1e-6).

The Casal2 ADOL-C and BetaDiff low tolerance models have a smaller tolerance value than the CASAL base model (1e-9 vs. 1e-6).

1.1 HOK model characteristics

The main characteristics of the Test Case HOK (hoki) CASAL model are:

  • one stock, ages 1 - 17
  • one area, although many characteristics are separated into "east" and "west"
  • years 1972 - 2018, projection years 2019 - 2023
  • five time steps: Oct_Nov, Dec_Mar, Apr_Jun, End_Jun, and Jul_Sep
  • five stock categories: west.sa, east.cr, west.cr, west.wc, and east.cs (labeled "stock.area")
  • five migration processes, which have age-specific proportions specified
  • sex-specific natural mortality-at-age is double exponential
  • area-specific von Bertalanffy age-length relationship
  • area-specific length-weight relationship (\(W = aL^b\))
  • area-specific Beverton-Holt stock-recruitment relationships, with steepness (h) 0.75
  • ageing error is specified
  • surveys with double normal selectivity
  • six area-specific fisheries with double normal selectivity

Observation data include:

  • survey indices
  • survey proportions-at-age
  • fishery proportions-at-age

Parameters estimated include:

  • area-specific B0
  • parameters for the natural mortality-at-age ogive
  • catchability (q) for the surveys
  • parameters for the selectivity curves for the surveys
  • parameters for the selectivity curves for the fisheries
  • migration proportions by age
  • area-specific YCS (recruitment deviations)

1.2 R environment

## [1] "Fri Aug 26 13:00:20 2022"
## R version 3.6.0 (2019-04-26)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
## 
## Matrix products: default
## BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
## 
## locale:
##  [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8    
##  [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
##  [7] LC_PAPER=en_GB.UTF_8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] Casal2_22.08   casal_2.30     devtools_2.4.4 usethis_2.1.6  rlist_0.4.6.2 
##  [6] ggthemes_4.2.4 gridExtra_2.3  coda_0.19-4    ggmcmc_1.5.1.1 ggplot2_3.3.6 
## [11] tidyr_1.2.0    huxtable_5.5.0 dplyr_1.0.9    plyr_1.8.7    
## 
## loaded via a namespace (and not attached):
##  [1] Rcpp_1.0.9         lattice_0.20-38    prettyunits_1.1.1  ps_1.7.1          
##  [5] assertthat_0.2.1   digest_0.6.29      utf8_1.2.2         mime_0.12         
##  [9] R6_2.5.1           evaluate_0.16      pillar_1.8.1       rlang_1.0.4       
## [13] data.table_1.14.2  miniUI_0.1.1.1     urlchecker_1.0.1   callr_3.7.2       
## [17] jquerylib_0.1.4    rmarkdown_2.16     stringr_1.4.1      htmlwidgets_1.5.4 
## [21] munsell_0.5.0      shiny_1.7.2        compiler_3.6.0     httpuv_1.6.5      
## [25] xfun_0.32          pkgconfig_2.0.3    pkgbuild_1.3.1     htmltools_0.5.3   
## [29] tidyselect_1.1.2   tibble_3.1.8       reshape_0.8.9      fansi_1.0.3       
## [33] crayon_1.5.1       withr_2.5.0        later_1.3.0        grid_3.6.0        
## [37] jsonlite_1.8.0     xtable_1.8-4       GGally_2.1.2       gtable_0.3.0      
## [41] lifecycle_1.0.1    magrittr_2.0.3     scales_1.2.1       cli_3.3.0         
## [45] stringi_1.7.8      cachem_1.0.6       remotes_2.4.2      fs_1.5.2          
## [49] promises_1.2.0.1   bslib_0.4.0        ellipsis_0.3.2     generics_0.1.3    
## [53] vctrs_0.4.1        RColorBrewer_1.1-3 tools_3.6.0        glue_1.6.2        
## [57] purrr_0.3.4        pkgload_1.3.0      processx_3.7.0     fastmap_1.1.0     
## [61] yaml_2.3.5         colorspace_2.0-3   sessioninfo_1.2.2  memoise_2.0.1     
## [65] knitr_1.40         profvis_0.3.7      sass_0.4.2

1.3 CASAL and Casal2 model output

source('../../R-functions/report_read_in_CASAL_MPD_files.R')
source('../../R-functions/report_read_in_Casal2_MPD_files.R')

1.4 Tables

Tables of parameter estimates and objective function components for the CASAL and Casal2 model MPD results

CASAL parameter estimates
rownamesBase_ModelSensitivity_1Percent_Diff
q[CSacous].q               0.431200.431200.000
q[WCacous].q               0.300200.300200.000
q[CRsum].q               0.074310.074310.000
q[SAsum].q               0.059250.059250.000
q[SAaut].q               0.067170.067170.000
relative_abundance[CRsumbio].cv_process_error0.140500.140500.000
relative_abundance[SAsumbio].cv_process_error0.430600.430600.000
log_B0_total                 14.3400014.340000.000
B0_prop_stock1                 0.328700.328700.000
natural_mortality.all             0.296000.296000.000
selectivity[Wspsl].shift_a         -0.21740-0.217400.000
recruitment[E].YCS1            0.447800.447800.000
recruitment[E].YCS2            0.726800.726800.000
recruitment[E].YCS3            0.784500.784500.000
recruitment[E].YCS4            1.360001.360000.000
recruitment[E].YCS5            0.987800.987800.000
recruitment[E].YCS6            0.329300.329300.000
recruitment[E].YCS7            0.447200.447200.000
recruitment[E].YCS8            0.265600.265600.000
recruitment[E].YCS9            0.434200.434200.000
recruitment[E].YCS10           0.488000.488000.000
recruitment[E].YCS11           0.395700.395700.000
recruitment[E].YCS12           0.217900.217900.000
recruitment[E].YCS13           1.036001.036000.000
recruitment[E].YCS14           0.958900.958900.000
recruitment[E].YCS15           0.429000.429000.000
recruitment[E].YCS16           0.138100.138100.000
recruitment[E].YCS17           0.375000.375000.000
recruitment[E].YCS18           0.391600.391600.000
recruitment[E].YCS19           0.383100.383100.000
recruitment[E].YCS20           0.562900.562900.000
recruitment[E].YCS21           0.264000.264000.000
recruitment[E].YCS22           0.284500.284500.000
recruitment[E].YCS23           0.450000.450000.000
recruitment[E].YCS24           0.253100.253100.000
recruitment[E].YCS25           0.060000.060000.000
recruitment[E].YCS26           0.462200.462200.000
recruitment[E].YCS27           0.161600.161600.000
recruitment[E].YCS28           0.266900.266900.000
recruitment[E].YCS29           0.500400.500400.000
recruitment[E].YCS30           0.520000.520000.000
recruitment[E].YCS31           0.508800.508800.000
recruitment[E].YCS32           0.600600.600600.000
recruitment[E].YCS33           0.522100.522100.000
recruitment[E].YCS34           0.373000.373000.000
recruitment[E].YCS35           0.526800.526800.000
recruitment[E].YCS36           0.158600.158600.000
recruitment[E].YCS37           0.660600.660600.000
recruitment[E].YCS38           0.156000.156000.000
recruitment[E].YCS39           0.185800.185800.000
recruitment[E].YCS40           0.730600.730600.000
recruitment[E].YCS41           0.739000.739000.000
recruitment[E].YCS42           1.195001.195000.000
recruitment[W].YCS1            0.457000.457000.000
recruitment[W].YCS2            0.822200.822200.000
recruitment[W].YCS3            0.670000.670000.000
recruitment[W].YCS4            0.653900.653900.000
recruitment[W].YCS5            0.465900.465900.000
recruitment[W].YCS6            0.515100.515100.000
recruitment[W].YCS7            0.578200.578200.000
recruitment[W].YCS8            0.473300.473300.000
recruitment[W].YCS9            0.871900.871900.000
recruitment[W].YCS10           0.836500.836500.000
recruitment[W].YCS11           0.320200.320200.000
recruitment[W].YCS12           0.165000.165000.000
recruitment[W].YCS13           1.476001.476000.000
recruitment[W].YCS14           0.772800.772800.000
recruitment[W].YCS15           0.081350.081350.000
recruitment[W].YCS16           0.081580.081580.000
recruitment[W].YCS17           0.892800.892800.000
recruitment[W].YCS18           1.268001.268000.000
recruitment[W].YCS19           0.377200.377200.000
recruitment[W].YCS20           0.959400.959400.000
recruitment[W].YCS21           0.221100.221100.000
recruitment[W].YCS22           0.197200.197200.000
recruitment[W].YCS23           0.238000.238000.000
recruitment[W].YCS24           0.202900.202900.000
recruitment[W].YCS25           0.060000.060000.000
recruitment[W].YCS26           0.373000.373000.000
recruitment[W].YCS27           0.095480.095480.000
recruitment[W].YCS28           0.795600.795600.000
recruitment[W].YCS29           0.465200.465200.000
recruitment[W].YCS30           0.516600.516600.000
recruitment[W].YCS31           0.511300.511300.000
recruitment[W].YCS32           0.755400.755400.000
recruitment[W].YCS33           0.638900.638900.000
recruitment[W].YCS34           0.616900.616900.000
recruitment[W].YCS35           0.578400.578400.000
recruitment[W].YCS36           0.145500.145500.000
recruitment[W].YCS37           0.974800.974800.000
recruitment[W].YCS38           0.160200.160200.000
recruitment[W].YCS39           0.244400.244400.000
recruitment[W].YCS40           2.197002.197000.000
recruitment[W].YCS41           2.152002.152000.000
recruitment[W].YCS42           1.195001.195000.000
migration[Whome].rates_all1      0.327800.327800.000
migration[Whome].rates_all2      0.307800.307800.000
migration[Whome].rates_all3      0.476200.476200.000
migration[Whome].rates_all4      0.141800.141800.000
migration[Whome].rates_all5      0.468300.46840-0.021
migration[Whome].rates_all6      0.750300.750300.000
migration[Whome].rates_all7      0.788200.78840-0.025
migration[Whome].rates_all8      1.000001.000000.000
migration[Espmg].rates_all1      0.005660.005660.000
migration[Espmg].rates_all2      0.160200.160200.000
migration[Espmg].rates_all3      0.324100.324100.000
migration[Espmg].rates_all4      0.431200.431200.000
migration[Espmg].rates_all5      0.385500.385500.000
migration[Espmg].rates_all6      0.465300.465300.000
migration[Espmg].rates_all7      0.599000.599000.000
migration[Espmg].rates_all8      0.607800.607800.000
migration[Wspmg].rates_all1      0.106100.106100.000
migration[Wspmg].rates_all2      0.287700.287700.000
migration[Wspmg].rates_all3      0.270800.270800.000
migration[Wspmg].rates_all4      0.455300.455300.000
migration[Wspmg].rates_all5      0.484700.484700.000
migration[Wspmg].rates_all6      0.527100.527100.000
migration[Wspmg].rates_all7      0.660600.660600.000
migration[Wspmg].rates_all8      0.596300.596300.000
selectivity[Enspsl].all1            3.567003.567000.000
selectivity[Enspsl].all2            1.221001.221000.000
selectivity[Enspsl].all3            15.7100015.710000.000
selectivity[Wnspsl].all1            5.341005.341000.000
selectivity[Wnspsl].all2            2.839002.839000.000
selectivity[Wnspsl].all3            13.3800013.380000.000
selectivity[Espsl].all1            10.8800010.880000.000
selectivity[Espsl].all2            11.6800011.680000.000
selectivity[Espsl].all3            3.982003.982000.000
selectivity[CRsl].all1            1.000001.000000.000
selectivity[CRsl].all2            1.000001.000000.000
selectivity[CRsl].all3            9.300009.300000.000
selectivity[SAsl].all1            14.2500014.250000.000
selectivity[SAsl].all2            8.756008.756000.000
selectivity[SAsl].all3            1.315001.315000.000
Casal2 parameter estimates
rownamesbetadiff_casal_flags_onbetadiff_casal_flags_offbetadiff_casal_flags_on_low_toladolc_casal_flags_onadolc_casal_flags_offadolc_casal_flags_on_low_tol
catchability[CSacous].q                            0.427860.427860.431160.427860.427860.42786
catchability[WCacous].q                            0.312440.312440.300240.312440.312440.31244
catchability[CRsum].q                            0.068110.068110.074310.068110.068110.06811
catchability[SAsum].q                            0.067060.067060.059250.067060.067060.06706
catchability[SAaut].q                            0.075630.075630.067170.075630.075630.07563
observation[CRsumbio].process_error                0.140890.140890.140480.140890.140890.14089
observation[SAsumbio].process_error                0.423810.423810.430610.423810.423810.42381
parameter_transformation[log_sum_b0].log_total_parameter          14.3046014.3046014.3395014.3046014.3046014.30460
parameter_transformation[log_sum_b0].total_proportion_parameter   0.335710.335710.328710.335710.335710.33571
process[Instant_mortality].m{west.sa}                          0.312930.312930.295980.312930.312930.31293
time_varying[shifted_mu].a                            -0.22959-0.22959-0.21744-0.22959-0.22959-0.22959
process[recruit_E].recruitment_multipliers{1977}0.445890.445890.447820.445890.445890.44589
process[recruit_E].recruitment_multipliers{1978}0.730530.730530.726800.730520.730520.73052
process[recruit_E].recruitment_multipliers{1979}0.793320.793320.784540.793320.793320.79332
process[recruit_E].recruitment_multipliers{1980}1.388281.388281.360011.388271.388271.38827
process[recruit_E].recruitment_multipliers{1981}1.003721.003720.987761.003721.003721.00372
process[recruit_E].recruitment_multipliers{1982}0.334620.334620.329320.334620.334620.33462
process[recruit_E].recruitment_multipliers{1983}0.455350.455350.447230.455350.455350.45535
process[recruit_E].recruitment_multipliers{1984}0.269890.269890.265560.269890.269890.26989
process[recruit_E].recruitment_multipliers{1985}0.441000.441000.434180.441000.441000.44100
process[recruit_E].recruitment_multipliers{1986}0.494220.494220.488040.494220.494220.49422
process[recruit_E].recruitment_multipliers{1987}0.400140.400140.395700.400140.400140.40014
process[recruit_E].recruitment_multipliers{1988}0.219820.219820.217910.219820.219820.21982
process[recruit_E].recruitment_multipliers{1989}1.040951.040951.036401.040951.040951.04095
process[recruit_E].recruitment_multipliers{1990}0.963150.963150.958910.963150.963150.96315
process[recruit_E].recruitment_multipliers{1991}0.431120.431120.428990.431120.431120.43112
process[recruit_E].recruitment_multipliers{1992}0.137980.137980.138100.137980.137980.13798
process[recruit_E].recruitment_multipliers{1993}0.373350.373350.375000.373350.373350.37335
process[recruit_E].recruitment_multipliers{1994}0.387570.387570.391640.387570.387570.38757
process[recruit_E].recruitment_multipliers{1995}0.379880.379880.383100.379880.379880.37988
process[recruit_E].recruitment_multipliers{1996}0.557260.557260.562850.557260.557260.55726
process[recruit_E].recruitment_multipliers{1997}0.261780.261780.263990.261780.261780.26178
process[recruit_E].recruitment_multipliers{1998}0.282480.282480.284470.282480.282480.28248
process[recruit_E].recruitment_multipliers{1999}0.447590.447590.450030.447590.447590.44759
process[recruit_E].recruitment_multipliers{2000}0.252490.252490.253070.252490.252490.25249
process[recruit_E].recruitment_multipliers{2001}0.060000.060000.060000.060000.060000.06000
process[recruit_E].recruitment_multipliers{2002}0.459870.459870.462200.459870.459870.45987
process[recruit_E].recruitment_multipliers{2003}0.160870.160870.161650.160870.160870.16087
process[recruit_E].recruitment_multipliers{2004}0.265600.265600.266890.265600.265600.26560
process[recruit_E].recruitment_multipliers{2005}0.499430.499430.500380.499430.499430.49943
process[recruit_E].recruitment_multipliers{2006}0.520310.520310.520030.520310.520310.52031
process[recruit_E].recruitment_multipliers{2007}0.507530.507530.508820.507540.507540.50754
process[recruit_E].recruitment_multipliers{2008}0.599860.599860.600550.599860.599860.59986
process[recruit_E].recruitment_multipliers{2009}0.520800.520800.522150.520800.520800.52080
process[recruit_E].recruitment_multipliers{2010}0.370470.370470.373000.370470.370470.37047
process[recruit_E].recruitment_multipliers{2011}0.527860.527860.526810.527860.527860.52786
process[recruit_E].recruitment_multipliers{2012}0.156900.156900.158640.156900.156900.15690
process[recruit_E].recruitment_multipliers{2013}0.660290.660290.660580.660290.660290.66029
process[recruit_E].recruitment_multipliers{2014}0.155580.155580.156000.155580.155580.15558
process[recruit_E].recruitment_multipliers{2015}0.185180.185180.185840.185180.185180.18518
process[recruit_E].recruitment_multipliers{2016}0.728080.728080.730620.728080.728080.72808
process[recruit_E].recruitment_multipliers{2017}0.752310.752310.739000.752310.752310.75231
process[recruit_E].recruitment_multipliers{2018}1.189391.189391.195151.189391.189391.18939
process[recruit_W].recruitment_multipliers{1977}0.458720.458720.457020.458720.458720.45872
process[recruit_W].recruitment_multipliers{1978}0.814330.814330.822180.814330.814330.81433
process[recruit_W].recruitment_multipliers{1979}0.684940.684940.670000.684940.684940.68494
process[recruit_W].recruitment_multipliers{1980}0.669060.669060.653900.669050.669050.66905
process[recruit_W].recruitment_multipliers{1981}0.472750.472750.465900.472760.472760.47276
process[recruit_W].recruitment_multipliers{1982}0.520520.520520.515120.520520.520520.52052
process[recruit_W].recruitment_multipliers{1983}0.583280.583280.578240.583280.583280.58328
process[recruit_W].recruitment_multipliers{1984}0.474400.474400.473280.474400.474400.47440
process[recruit_W].recruitment_multipliers{1985}0.873750.873750.871920.873750.873750.87375
process[recruit_W].recruitment_multipliers{1986}0.837380.837380.836460.837380.837380.83738
process[recruit_W].recruitment_multipliers{1987}0.319750.319750.320240.319750.319750.31975
process[recruit_W].recruitment_multipliers{1988}0.164840.164840.164970.164840.164840.16484
process[recruit_W].recruitment_multipliers{1989}1.480661.480661.475551.480661.480661.48066
process[recruit_W].recruitment_multipliers{1990}0.775300.775300.772760.775300.775300.77530
process[recruit_W].recruitment_multipliers{1991}0.081470.081470.081340.081470.081470.08147
process[recruit_W].recruitment_multipliers{1992}0.081800.081800.081580.081800.081800.08180
process[recruit_W].recruitment_multipliers{1993}0.891890.891890.892800.891890.891890.89189
process[recruit_W].recruitment_multipliers{1994}1.267831.267831.267781.267831.267831.26783
process[recruit_W].recruitment_multipliers{1995}0.376480.376480.377220.376480.376480.37648
process[recruit_W].recruitment_multipliers{1996}0.955570.955570.959390.955570.955570.95557
process[recruit_W].recruitment_multipliers{1997}0.220150.220150.221130.220150.220150.22015
process[recruit_W].recruitment_multipliers{1998}0.196260.196260.197180.196260.196260.19626
process[recruit_W].recruitment_multipliers{1999}0.236780.236780.237950.236780.236780.23678
process[recruit_W].recruitment_multipliers{2000}0.200610.200610.202920.200610.200610.20061
process[recruit_W].recruitment_multipliers{2001}0.060000.060000.060000.060000.060000.06000
process[recruit_W].recruitment_multipliers{2002}0.371330.371330.373040.371330.371330.37133
process[recruit_W].recruitment_multipliers{2003}0.095100.095100.095480.095100.095100.09510
process[recruit_W].recruitment_multipliers{2004}0.795760.795760.795580.795760.795760.79576
process[recruit_W].recruitment_multipliers{2005}0.465880.465880.465170.465880.465880.46588
process[recruit_W].recruitment_multipliers{2006}0.517840.517840.516620.517840.517840.51784
process[recruit_W].recruitment_multipliers{2007}0.513140.513140.511260.513140.513140.51314
process[recruit_W].recruitment_multipliers{2008}0.754870.754870.755440.754870.754870.75487
process[recruit_W].recruitment_multipliers{2009}0.636760.636760.638910.636760.636760.63676
process[recruit_W].recruitment_multipliers{2010}0.616140.616140.616860.616140.616140.61614
process[recruit_W].recruitment_multipliers{2011}0.572920.572920.578410.572920.572920.57292
process[recruit_W].recruitment_multipliers{2012}0.146260.146260.145470.146260.146260.14626
process[recruit_W].recruitment_multipliers{2013}0.966690.966690.974780.966690.966690.96669
process[recruit_W].recruitment_multipliers{2014}0.158970.158970.160160.158970.158970.15897
process[recruit_W].recruitment_multipliers{2015}0.243890.243890.244440.243890.243890.24389
process[recruit_W].recruitment_multipliers{2016}2.184742.184742.196572.184742.184742.18474
process[recruit_W].recruitment_multipliers{2017}2.149692.149692.152042.149692.149692.14969
process[recruit_W].recruitment_multipliers{2018}1.189621.189621.195391.189621.189621.18962
selectivity[sel_Whome].v{1}                         0.321360.321360.327830.321360.321360.32136
selectivity[sel_Whome].v{2}                         0.283860.283860.307780.283860.283860.28386
selectivity[sel_Whome].v{3}                         0.457750.457750.476200.457750.457750.45775
selectivity[sel_Whome].v{4}                         0.135020.135020.141840.135020.135020.13502
selectivity[sel_Whome].v{5}                         0.431690.431690.468360.431690.431690.43169
selectivity[sel_Whome].v{6}                         0.718910.718910.750260.718910.718910.71891
selectivity[sel_Whome].v{7}                         0.759580.759580.788410.759610.759610.75961
selectivity[sel_Espmg].v{1}                         0.005640.005640.005660.005640.005640.00564
selectivity[sel_Espmg].v{2}                         0.159010.159010.160210.159010.159010.15901
selectivity[sel_Espmg].v{3}                         0.320560.320560.324110.320560.320560.32056
selectivity[sel_Espmg].v{4}                         0.425130.425130.431230.425130.425130.42513
selectivity[sel_Espmg].v{5}                         0.379270.379270.385460.379270.379270.37927
selectivity[sel_Espmg].v{6}                         0.458470.458470.465350.458470.458470.45847
selectivity[sel_Espmg].v{7}                         0.590440.590440.599020.590440.590440.59044
selectivity[sel_Espmg].v{8}                         0.610640.610640.607780.610640.610640.61064
selectivity[sel_Wspmg].v{1}                         0.105530.105530.106140.105530.105530.10553
selectivity[sel_Wspmg].v{2}                         0.291390.291390.287740.291390.291390.29139
selectivity[sel_Wspmg].v{3}                         0.270660.270660.270760.270660.270660.27066
selectivity[sel_Wspmg].v{4}                         0.455200.455200.455250.455200.455200.45520
selectivity[sel_Wspmg].v{5}                         0.484340.484340.484660.484340.484340.48434
selectivity[sel_Wspmg].v{6}                         0.523980.523980.527110.523980.523980.52398
selectivity[sel_Wspmg].v{7}                         0.655910.655910.660620.655910.655910.65591
selectivity[sel_Wspmg].v{8}                         0.601010.601010.596270.601010.601010.60101
selectivity[Enspsl].mu                           3.572273.572273.567163.572273.572273.57227
selectivity[Enspsl].sigma_l                      1.222061.222061.221081.222061.222061.22206
selectivity[Enspsl].sigma_r                      50.0000050.0000015.7137050.0000050.0000050.00000
selectivity[Wnspsl].mu                           5.329525.329525.341175.329525.329525.32952
selectivity[Wnspsl].sigma_l                      2.778462.778462.839342.778462.778462.77846
selectivity[Wnspsl].sigma_r                      49.9998049.9998013.3789049.9994049.9994049.99940
selectivity[Espsl].mu                           11.2547011.2547010.8788011.2547011.2547011.25470
selectivity[Espsl].sigma_l                      10.8594010.8594011.6775010.8594010.8594010.85940
selectivity[Espsl].sigma_r                      4.029124.029123.981654.029124.029124.02912
selectivity[CRsl].mu                           1.000001.000001.000001.000001.000001.00000
selectivity[CRsl].sigma_l                      46.5221046.5221046.0231046.5222046.5222046.52220
selectivity[CRsl].sigma_r                      10.0878010.087809.3004210.0878010.0878010.08780
selectivity[SAsl].mu                           14.8648014.8648014.2523014.8648014.8648014.86480
selectivity[SAsl].sigma_l                      8.692818.692818.755588.692818.692818.69281
selectivity[SAsl].sigma_r                      1.000001.000001.315191.000001.000001.00000
Casal2 parameter estimates: Percent Difference from betadiff_casal_flags_on
rownamesbetadiff_casal_flags_onbetadiff_casal_flags_offbetadiff_casal_flags_on_low_toladolc_casal_flags_onadolc_casal_flags_offadolc_casal_flags_on_low_tol
catchability[CSacous].q                            0.0000.000-0.7720.0000.0000.000
catchability[WCacous].q                            0.0000.0003.904-0.000-0.000-0.000
catchability[CRsum].q                            0.0000.000-9.090-0.000-0.000-0.000
catchability[SAsum].q                            0.0000.00011.6450.0000.0000.000
catchability[SAaut].q                            0.0000.00011.1960.0000.0000.000
observation[CRsumbio].process_error                0.0000.0000.2920.0000.0000.000
observation[SAsumbio].process_error                0.0000.000-1.6040.0000.0000.000
parameter_transformation[log_sum_b0].log_total_parameter          0.0000.000-0.2440.0000.0000.000
parameter_transformation[log_sum_b0].total_proportion_parameter   0.0000.0002.0860.0000.0000.000
process[Instant_mortality].m{west.sa}                          0.0000.0005.4160.0000.0000.000
time_varying[shifted_mu].a                            0.0000.0005.2930.0000.0000.000
process[recruit_E].recruitment_multipliers{1977}0.0000.000-0.431-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{1978}0.0000.0000.5110.0010.0010.001
process[recruit_E].recruitment_multipliers{1979}0.0000.0001.107-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{1980}0.0000.0002.0360.0010.0010.001
process[recruit_E].recruitment_multipliers{1981}0.0000.0001.5900.0000.0000.000
process[recruit_E].recruitment_multipliers{1982}0.0000.0001.5840.0000.0000.000
process[recruit_E].recruitment_multipliers{1983}0.0000.0001.7830.0000.0000.000
process[recruit_E].recruitment_multipliers{1984}0.0000.0001.6050.0000.0000.000
process[recruit_E].recruitment_multipliers{1985}0.0000.0001.5470.0000.0000.000
process[recruit_E].recruitment_multipliers{1986}0.0000.0001.2510.0000.0000.000
process[recruit_E].recruitment_multipliers{1987}0.0000.0001.111-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{1988}0.0000.0000.8720.0000.0000.000
process[recruit_E].recruitment_multipliers{1989}0.0000.0000.4370.0000.0000.000
process[recruit_E].recruitment_multipliers{1990}0.0000.0000.440-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{1991}0.0000.0000.4950.0000.0000.000
process[recruit_E].recruitment_multipliers{1992}0.0000.000-0.092-0.001-0.001-0.001
process[recruit_E].recruitment_multipliers{1993}0.0000.000-0.4430.0000.0000.000
process[recruit_E].recruitment_multipliers{1994}0.0000.000-1.050-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{1995}0.0000.000-0.847-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{1996}0.0000.000-1.0030.0000.0000.000
process[recruit_E].recruitment_multipliers{1997}0.0000.000-0.842-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{1998}0.0000.000-0.7040.0000.0000.000
process[recruit_E].recruitment_multipliers{1999}0.0000.000-0.546-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{2000}0.0000.000-0.2320.0000.0000.000
process[recruit_E].recruitment_multipliers{2001}0.0000.0000.0000.0000.0000.000
process[recruit_E].recruitment_multipliers{2002}0.0000.000-0.506-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{2003}0.0000.000-0.4820.0000.0000.000
process[recruit_E].recruitment_multipliers{2004}0.0000.000-0.4860.0000.0000.000
process[recruit_E].recruitment_multipliers{2005}0.0000.000-0.190-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{2006}0.0000.0000.0540.0000.0000.000
process[recruit_E].recruitment_multipliers{2007}0.0000.000-0.254-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{2008}0.0000.000-0.116-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{2009}0.0000.000-0.2590.0000.0000.000
process[recruit_E].recruitment_multipliers{2010}0.0000.000-0.6850.0000.0000.000
process[recruit_E].recruitment_multipliers{2011}0.0000.0000.199-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{2012}0.0000.000-1.1070.0000.0000.000
process[recruit_E].recruitment_multipliers{2013}0.0000.000-0.0440.0000.0000.000
process[recruit_E].recruitment_multipliers{2014}0.0000.000-0.264-0.001-0.001-0.001
process[recruit_E].recruitment_multipliers{2015}0.0000.000-0.3570.0000.0000.000
process[recruit_E].recruitment_multipliers{2016}0.0000.000-0.349-0.000-0.000-0.000
process[recruit_E].recruitment_multipliers{2017}0.0000.0001.7690.0000.0000.000
process[recruit_E].recruitment_multipliers{2018}0.0000.000-0.4840.0000.0000.000
process[recruit_W].recruitment_multipliers{1977}0.0000.0000.370-0.001-0.001-0.001
process[recruit_W].recruitment_multipliers{1978}0.0000.000-0.9630.0000.0000.000
process[recruit_W].recruitment_multipliers{1979}0.0000.0002.180-0.000-0.000-0.000
process[recruit_W].recruitment_multipliers{1980}0.0000.0002.2650.0000.0000.000
process[recruit_W].recruitment_multipliers{1981}0.0000.0001.450-0.000-0.000-0.001
process[recruit_W].recruitment_multipliers{1982}0.0000.0001.0380.0000.0000.000
process[recruit_W].recruitment_multipliers{1983}0.0000.0000.8650.0000.0000.000
process[recruit_W].recruitment_multipliers{1984}0.0000.0000.2370.0000.0000.000
process[recruit_W].recruitment_multipliers{1985}0.0000.0000.2090.0000.0000.000
process[recruit_W].recruitment_multipliers{1986}0.0000.0000.1100.0000.0000.000
process[recruit_W].recruitment_multipliers{1987}0.0000.000-0.1530.0000.0000.000
process[recruit_W].recruitment_multipliers{1988}0.0000.000-0.0760.0000.0000.000
process[recruit_W].recruitment_multipliers{1989}0.0000.0000.3450.0000.0000.000
process[recruit_W].recruitment_multipliers{1990}0.0000.0000.3280.0000.0000.000
process[recruit_W].recruitment_multipliers{1991}0.0000.0000.1580.0000.0000.000
process[recruit_W].recruitment_multipliers{1992}0.0000.0000.2670.0000.0000.000
process[recruit_W].recruitment_multipliers{1993}0.0000.000-0.1020.0000.0000.000
process[recruit_W].recruitment_multipliers{1994}0.0000.0000.0040.0000.0000.000
process[recruit_W].recruitment_multipliers{1995}0.0000.000-0.1960.0000.0000.000
process[recruit_W].recruitment_multipliers{1996}0.0000.000-0.4000.0000.0000.000
process[recruit_W].recruitment_multipliers{1997}0.0000.000-0.4450.0000.0000.000
process[recruit_W].recruitment_multipliers{1998}0.0000.000-0.4680.0000.0000.000
process[recruit_W].recruitment_multipliers{1999}0.0000.000-0.4950.0000.0000.000
process[recruit_W].recruitment_multipliers{2000}0.0000.000-1.1510.0000.0000.000
process[recruit_W].recruitment_multipliers{2001}0.0000.0000.0000.0000.0000.000
process[recruit_W].recruitment_multipliers{2002}0.0000.000-0.4620.0000.0000.000
process[recruit_W].recruitment_multipliers{2003}0.0000.000-0.409-0.000-0.000-0.000
process[recruit_W].recruitment_multipliers{2004}0.0000.0000.0220.0000.0000.000
process[recruit_W].recruitment_multipliers{2005}0.0000.0000.1540.0000.0000.000
process[recruit_W].recruitment_multipliers{2006}0.0000.0000.235-0.000-0.000-0.000
process[recruit_W].recruitment_multipliers{2007}0.0000.0000.3670.0010.0010.001
process[recruit_W].recruitment_multipliers{2008}0.0000.000-0.0760.0000.0000.000
process[recruit_W].recruitment_multipliers{2009}0.0000.000-0.338-0.000-0.000-0.000
process[recruit_W].recruitment_multipliers{2010}0.0000.000-0.1180.0000.0000.000
process[recruit_W].recruitment_multipliers{2011}0.0000.000-0.9580.0000.0000.000
process[recruit_W].recruitment_multipliers{2012}0.0000.0000.5390.0010.0010.001
process[recruit_W].recruitment_multipliers{2013}0.0000.000-0.8370.0000.0000.000
process[recruit_W].recruitment_multipliers{2014}0.0000.000-0.7500.0000.0000.000
process[recruit_W].recruitment_multipliers{2015}0.0000.000-0.2240.0000.0000.000
process[recruit_W].recruitment_multipliers{2016}0.0000.000-0.5410.0000.0000.000
process[recruit_W].recruitment_multipliers{2017}0.0000.000-0.1090.0000.0000.000
process[recruit_W].recruitment_multipliers{2018}0.0000.000-0.4850.0000.0000.000
selectivity[sel_Whome].v{1}                         0.0000.000-2.0140.0000.0000.000
selectivity[sel_Whome].v{2}                         0.0000.000-8.4280.0000.0000.000
selectivity[sel_Whome].v{3}                         0.0000.000-4.031-0.000-0.0000.000
selectivity[sel_Whome].v{4}                         0.0000.000-5.050-0.002-0.002-0.002
selectivity[sel_Whome].v{5}                         0.0000.000-8.496-0.001-0.001-0.001
selectivity[sel_Whome].v{6}                         0.0000.000-4.3610.0000.0000.000
selectivity[sel_Whome].v{7}                         0.0000.000-3.795-0.004-0.004-0.003
selectivity[sel_Espmg].v{1}                         0.0000.000-0.4120.0000.0000.000
selectivity[sel_Espmg].v{2}                         0.0000.000-0.7570.0000.0000.000
selectivity[sel_Espmg].v{3}                         0.0000.000-1.1070.0000.0000.000
selectivity[sel_Espmg].v{4}                         0.0000.000-1.4340.0000.0000.000
selectivity[sel_Espmg].v{5}                         0.0000.000-1.6330.0000.0000.000
selectivity[sel_Espmg].v{6}                         0.0000.000-1.5000.0000.0000.000
selectivity[sel_Espmg].v{7}                         0.0000.000-1.4520.0000.0000.000
selectivity[sel_Espmg].v{8}                         0.0000.0000.468-0.000-0.000-0.000
selectivity[sel_Wspmg].v{1}                         0.0000.000-0.5860.0000.0000.000
selectivity[sel_Wspmg].v{2}                         0.0000.0001.2520.0000.0000.000
selectivity[sel_Wspmg].v{3}                         0.0000.000-0.0370.0000.0000.000
selectivity[sel_Wspmg].v{4}                         0.0000.000-0.0120.0000.0000.000
selectivity[sel_Wspmg].v{5}                         0.0000.000-0.0660.0000.0000.000
selectivity[sel_Wspmg].v{6}                         0.0000.000-0.5970.0000.0000.000
selectivity[sel_Wspmg].v{7}                         0.0000.000-0.718-0.000-0.000-0.000
selectivity[sel_Wspmg].v{8}                         0.0000.0000.7880.0000.0000.000
selectivity[Enspsl].mu                           0.0000.0000.1430.0000.0000.000
selectivity[Enspsl].sigma_l                      0.0000.0000.0800.0000.0000.000
selectivity[Enspsl].sigma_r                      0.0000.00068.5730.0000.0000.000
selectivity[Wnspsl].mu                           0.0000.000-0.2190.0000.0000.000
selectivity[Wnspsl].sigma_l                      0.0000.000-2.1910.0000.0000.000
selectivity[Wnspsl].sigma_r                      0.0000.00073.2420.0010.0010.001
selectivity[Espsl].mu                           0.0000.0003.3400.0000.0000.000
selectivity[Espsl].sigma_l                      0.0000.000-7.5340.0000.0000.000
selectivity[Espsl].sigma_r                      0.0000.0001.1780.0000.0000.000
selectivity[CRsl].mu                           0.0000.0000.0000.0000.0000.000
selectivity[CRsl].sigma_l                      0.0000.0001.073-0.000-0.000-0.000
selectivity[CRsl].sigma_r                      0.0000.0007.8050.0000.0000.000
selectivity[SAsl].mu                           0.0000.0004.1200.0000.0000.000
selectivity[SAsl].sigma_l                      0.0000.000-0.7220.0000.0000.000
selectivity[SAsl].sigma_r                      0.0000.000-31.5190.0000.0000.000

CASAL objective function component values
ComponentBase_ModelSensitivity_1
CRsumbio-31.030-31.030
CSacous-9.836-9.836
SAautbio-3.984-3.984
SAsumbio-6.146-6.146
WCacous-5.916-5.916
CRsumage323.800323.800
SAautage35.12035.120
SAsumage221.100221.100
EnspOLF24.28024.280
Enspage256.100256.100
Espage581.500581.500
WnspOLF70.25070.250
Wnspage157.000157.000
Wspage364.800364.800
pspawn-13.130-13.130
pspawn_1993-6.015-6.015
prior_on_q[CSacous].q-0.839-0.839
prior_on_q[WCacous].q-1.202-1.202
prior_on_q[CRsum].q-2.207-2.207
prior_on_q[SAsum].q-1.557-1.557
prior_on_q[SAaut].q-1.762-1.762
prior_on_relative_abundance[CRsumbio].cv_process_error0.0000.000
prior_on_relative_abundance[SAsumbio].cv_process_error0.0000.000
prior_on_log_B0_total0.0000.000
prior_on_B0_prop_stock112.56012.560
prior_on_natural_mortality.all-1.217-1.217
prior_on_selectivity[Wspsl].shift_a0.3780.378
prior_on_recruitment[E].YCS-13.750-13.750
prior_on_recruitment[W].YCS-1.785-1.785
prior_on_migration[Whome].rates_all0.0000.000
prior_on_migration[Espmg].rates_all0.0000.000
prior_on_migration[Wspmg].rates_all0.0000.000
prior_on_selectivity[Enspsl].all0.0000.000
prior_on_selectivity[Wnspsl].all0.0000.000
prior_on_selectivity[Espsl].all0.0000.000
prior_on_selectivity[CRsl].all0.0000.000
prior_on_selectivity[SAsl].all0.0000.000
Umax_Ensp10.0000.000
Umax_Ensp20.0000.000
Umax_Wnsp10.0000.000
Umax_Wnsp20.0000.000
Umax_Esp0.0000.000
Umax_Wsp0.0000.000
YCS.eq.160.0000.000
sp.migr0.0130.013
Total1947.0001947.000
Casal2 objective function component values
rownamesbetadiff_casal_flags_onbetadiff_casal_flags_offbetadiff_casal_flags_on_low_toladolc_casal_flags_onadolc_casal_flags_offadolc_casal_flags_on_low_tol
observation->CSacousbio->1991                              2.3442.3442.4042.3442.3442.344
observation->CSacousbio->1993                              -0.577-0.577-0.588-0.577-0.577-0.577
observation->CSacousbio->1994                              -0.016-0.016-0.030-0.016-0.016-0.016
observation->CSacousbio->1995                              -0.562-0.562-0.567-0.562-0.562-0.562
observation->CSacousbio->1996                              -0.027-0.0270.013-0.027-0.027-0.027
observation->CSacousbio->1997                              -0.912-0.912-0.899-0.912-0.912-0.912
observation->CSacousbio->1998                              -0.055-0.055-0.004-0.055-0.055-0.055
observation->CSacousbio->1999                              -1.025-1.025-1.012-1.025-1.025-1.025
observation->CSacousbio->2001                              -1.217-1.217-1.211-1.217-1.217-1.217
observation->CSacousbio->2002                              -0.297-0.297-0.338-0.297-0.297-0.297
observation->CSacousbio->2003                              -0.845-0.845-0.863-0.845-0.845-0.845
observation->CSacousbio->2005                              -0.929-0.929-0.927-0.929-0.929-0.929
observation->CSacousbio->2006                              -0.939-0.939-0.950-0.939-0.939-0.939
observation->CSacousbio->2007                              -0.623-0.623-0.600-0.623-0.623-0.623
observation->CSacousbio->2008                              -1.094-1.094-1.125-1.094-1.094-1.094
observation->CSacousbio->2009                              -0.186-0.186-0.110-0.186-0.186-0.186
observation->CSacousbio->2011                              -1.021-1.021-1.000-1.021-1.021-1.021
observation->CSacousbio->2013                              -0.892-0.892-0.855-0.892-0.892-0.892
observation->CSacousbio->2015                              -0.191-0.191-0.150-0.191-0.191-0.191
observation->CSacousbio->2017                              -1.020-1.020-1.021-1.020-1.020-1.020
observation->WCacousbio->1988                              -0.588-0.588-0.588-0.588-0.588-0.588
observation->WCacousbio->1989                              -0.184-0.184-0.168-0.184-0.184-0.184
observation->WCacousbio->1990                              -0.331-0.331-0.327-0.331-0.331-0.331
observation->WCacousbio->1991                              -0.425-0.425-0.425-0.425-0.425-0.425
observation->WCacousbio->1992                              -0.744-0.744-0.744-0.744-0.744-0.744
observation->WCacousbio->1993                              -0.371-0.371-0.374-0.371-0.371-0.371
observation->WCacousbio->1997                              -0.055-0.055-0.043-0.055-0.055-0.055
observation->WCacousbio->2000                              -1.264-1.264-1.272-1.264-1.264-1.264
observation->WCacousbio->2012                              -0.906-0.906-0.896-0.906-0.906-0.906
observation->WCacousbio->2013                              -1.079-1.079-1.079-1.079-1.079-1.079
observation->CRsumbio->1992                              -1.634-1.634-1.647-1.634-1.634-1.634
observation->CRsumbio->1993                              0.0410.0410.0430.0410.0410.041
observation->CRsumbio->1994                              -1.761-1.761-1.760-1.761-1.761-1.761
observation->CRsumbio->1995                              -1.431-1.431-1.406-1.431-1.431-1.431
observation->CRsumbio->1996                              -1.691-1.691-1.699-1.691-1.691-1.691
observation->CRsumbio->1997                              -0.609-0.609-0.635-0.609-0.609-0.609
observation->CRsumbio->1998                              -1.205-1.205-1.210-1.205-1.205-1.205
observation->CRsumbio->1999                              -0.950-0.950-0.919-0.950-0.950-0.950
observation->CRsumbio->2000                              -1.629-1.629-1.632-1.629-1.629-1.629
observation->CRsumbio->2001                              -1.773-1.773-1.775-1.773-1.773-1.773
observation->CRsumbio->2002                              -1.205-1.205-1.206-1.205-1.205-1.205
observation->CRsumbio->2003                              -1.748-1.748-1.744-1.748-1.748-1.748
observation->CRsumbio->2004                              -0.821-0.821-0.803-0.821-0.821-0.821
observation->CRsumbio->2005                              -1.470-1.470-1.477-1.470-1.470-1.470
observation->CRsumbio->2006                              -1.314-1.314-1.306-1.314-1.314-1.314
observation->CRsumbio->2007                              -0.726-0.726-0.756-0.726-0.726-0.726
observation->CRsumbio->2008                              -0.376-0.376-0.402-0.376-0.376-0.376
observation->CRsumbio->2009                              -0.587-0.587-0.559-0.587-0.587-0.587
observation->CRsumbio->2010                              -1.350-1.350-1.359-1.350-1.350-1.350
observation->CRsumbio->2011                              -1.094-1.094-1.105-1.094-1.094-1.094
observation->CRsumbio->2012                              -1.438-1.438-1.448-1.438-1.438-1.438
observation->CRsumbio->2013                              -1.494-1.494-1.491-1.494-1.494-1.494
observation->CRsumbio->2014                              -1.768-1.768-1.770-1.768-1.768-1.768
observation->CRsumbio->2016                              -1.411-1.411-1.411-1.411-1.411-1.411
observation->CRsumbio->2018                              -1.552-1.552-1.554-1.552-1.552-1.552
observation->SAsumbio->1992                              -0.596-0.596-0.588-0.596-0.596-0.596
observation->SAsumbio->1993                              -0.314-0.314-0.309-0.314-0.314-0.314
observation->SAsumbio->1994                              0.1940.1940.1860.1940.1940.194
observation->SAsumbio->2001                              -0.834-0.834-0.822-0.834-0.834-0.834
observation->SAsumbio->2002                              -0.794-0.794-0.777-0.794-0.794-0.794
observation->SAsumbio->2003                              -0.836-0.836-0.825-0.836-0.836-0.836
observation->SAsumbio->2004                              0.7350.7350.7340.7350.7350.735
observation->SAsumbio->2005                              -0.255-0.255-0.218-0.255-0.255-0.255
observation->SAsumbio->2006                              -0.598-0.598-0.558-0.598-0.598-0.598
observation->SAsumbio->2007                              0.6370.6370.6540.6370.6370.637
observation->SAsumbio->2008                              -0.463-0.463-0.462-0.463-0.463-0.463
observation->SAsumbio->2009                              -0.584-0.584-0.583-0.584-0.584-0.584
observation->SAsumbio->2010                              -0.146-0.146-0.147-0.146-0.146-0.146
observation->SAsumbio->2012                              -0.848-0.848-0.835-0.848-0.848-0.848
observation->SAsumbio->2013                              -0.796-0.796-0.786-0.796-0.796-0.796
observation->SAsumbio->2015                              -0.201-0.201-0.189-0.201-0.201-0.201
observation->SAsumbio->2017                              -0.638-0.638-0.620-0.638-0.638-0.638
observation->SAautbio->1992                              -1.460-1.460-1.450-1.460-1.460-1.460
observation->SAautbio->1996                              -1.232-1.232-1.250-1.232-1.232-1.232
observation->SAautbio->1998                              -1.306-1.306-1.284-1.306-1.306-1.306
observation->Espage->1988                              19.79019.79019.64019.79019.79019.790
observation->Espage->1989                              15.85715.85715.86215.85715.85715.857
observation->Espage->1990                              21.48621.48621.44621.48621.48621.486
observation->Espage->1991                              20.64020.64020.61220.64020.64020.640
observation->Espage->1992                              24.09224.09224.02024.09224.09224.092
observation->Espage->1993                              19.30419.30419.32819.30419.30419.304
observation->Espage->1994                              20.52220.52220.50320.52220.52220.522
observation->Espage->1995                              22.53022.53022.55922.53022.53022.530
observation->Espage->1996                              18.59018.59018.57718.59018.59018.590
observation->Espage->1997                              20.97820.97820.96420.97820.97820.978
observation->Espage->1998                              20.57920.57920.61120.57920.57920.579
observation->Espage->1999                              22.87522.87522.86222.87522.87522.875
observation->Espage->2000                              23.32123.32123.31423.32123.32123.321
observation->Espage->2001                              20.73520.73520.77320.73520.73520.735
observation->Espage->2002                              26.24326.24326.28726.24326.24326.243
observation->Espage->2003                              19.11819.11819.12019.11819.11819.118
observation->Espage->2004                              22.69822.69822.64222.69822.69822.698
observation->Espage->2005                              26.12026.12026.07026.12026.12026.120
observation->Espage->2006                              23.24523.24523.14923.24523.24523.245
observation->Espage->2007                              25.27725.27725.21025.27725.27725.277
observation->Espage->2008                              22.16622.16622.12922.16622.16622.166
observation->Espage->2009                              18.69118.69118.69018.69118.69118.691
observation->Espage->2010                              21.85621.85621.85121.85621.85621.856
observation->Espage->2014                              20.61420.61420.64820.61420.61420.614
observation->Espage->2015                              21.82021.82021.87021.82021.82021.820
observation->Espage->2016                              21.20321.20321.20421.20321.20321.203
observation->Espage->2017                              21.57821.57821.56321.57821.57821.578
observation->Wspage->1988                              15.72915.72915.75315.72915.72915.729
observation->Wspage->1989                              11.55811.55811.56611.55811.55811.558
observation->Wspage->1990                              11.75011.75011.79011.75011.75011.750
observation->Wspage->1991                              13.03713.03713.05113.03713.03713.037
observation->Wspage->1992                              10.17910.17910.17010.17910.17910.179
observation->Wspage->1993                              10.57110.57110.57910.57110.57110.571
observation->Wspage->1994                              9.9189.9189.9249.9189.9189.918
observation->Wspage->1995                              13.39913.39913.39613.39913.39913.399
observation->Wspage->1996                              11.84111.84111.84411.84111.84111.841
observation->Wspage->1997                              11.23311.23311.24311.23311.23311.233
observation->Wspage->1998                              11.76111.76111.76211.76111.76111.761
observation->Wspage->1999                              11.97611.97611.98111.97611.97611.976
observation->Wspage->2000                              11.25611.25611.26011.25611.25611.256
observation->Wspage->2001                              12.18112.18112.20112.18112.18112.181
observation->Wspage->2002                              9.7329.7329.7459.7329.7329.732
observation->Wspage->2003                              9.5559.5559.5569.5559.5559.555
observation->Wspage->2004                              14.34214.34214.30414.34214.34214.342
observation->Wspage->2005                              14.93414.93414.97714.93414.93414.934
observation->Wspage->2006                              13.81713.81713.87213.81713.81713.817
observation->Wspage->2007                              11.50011.50011.51611.50011.50011.500
observation->Wspage->2008                              12.19612.19612.19412.19612.19612.196
observation->Wspage->2009                              12.63512.63512.59412.63512.63512.635
observation->Wspage->2010                              11.31711.31711.29911.31711.31711.317
observation->Wspage->2011                              11.15511.15511.13711.15511.15511.155
observation->Wspage->2012                              11.86611.86611.86011.86611.86611.866
observation->Wspage->2013                              11.04311.04311.06511.04311.04311.043
observation->Wspage->2014                              12.94412.94412.94112.94412.94412.944
observation->Wspage->2015                              13.13613.13613.10113.13613.13613.136
observation->Wspage->2016                              14.26814.26814.27314.26814.26814.268
observation->Wspage->2017                              13.74613.74613.79713.74613.74613.746
observation->EnspOLF->1992                              4.3964.3964.3884.3964.3964.396
observation->EnspOLF->1994                              6.6456.6456.6786.6456.6456.645
observation->EnspOLF->1996                              7.8997.8997.9067.8997.8997.899
observation->EnspOLF->1998                              5.3015.3015.3035.3015.3015.301
observation->Enspage->1999                              14.33114.33114.28714.33114.33114.331
observation->Enspage->2000                              13.97313.97313.96013.97313.97313.973
observation->Enspage->2001                              13.95913.95913.92913.95913.95913.959
observation->Enspage->2002                              12.08712.08712.07812.08712.08712.087
observation->Enspage->2003                              9.7029.7029.7069.7029.7029.702
observation->Enspage->2004                              12.97212.97212.98612.97212.97212.972
observation->Enspage->2005                              11.00911.00911.00911.00911.00911.009
observation->Enspage->2006                              12.74412.74412.71212.74412.74412.744
observation->Enspage->2007                              11.06011.06011.05211.06011.06011.060
observation->Enspage->2008                              12.10012.10012.10112.10012.10012.100
observation->Enspage->2009                              10.05510.05510.05510.05510.05510.055
observation->Enspage->2010                              17.57617.57617.62717.57617.57617.576
observation->Enspage->2011                              13.40213.40213.41213.40213.40213.402
observation->Enspage->2012                              13.14813.14813.13413.14813.14813.148
observation->Enspage->2013                              16.69116.69116.65916.69116.69116.691
observation->Enspage->2014                              13.86813.86813.87013.86813.86813.868
observation->Enspage->2015                              12.76412.76412.77612.76412.76412.764
observation->Enspage->2016                              19.22219.22219.20319.22219.22219.222
observation->Enspage->2017                              15.55215.55215.51115.55215.55215.552
observation->WnspOLF->1992                              10.12410.12410.12910.12410.12410.124
observation->WnspOLF->1993                              9.0479.0478.9919.0479.0479.047
observation->WnspOLF->1994                              15.93115.93115.89315.93115.93115.931
observation->WnspOLF->1996                              9.7849.7849.7529.7849.7849.784
observation->WnspOLF->1999                              11.55311.55311.59311.55311.55311.553
observation->WnspOLF->2000                              13.81713.81713.89213.81713.81713.817
observation->Wnspage->2001                              8.0368.0367.9948.0368.0368.036
observation->Wnspage->2002                              8.7148.7148.7018.7148.7148.714
observation->Wnspage->2003                              10.47310.47310.50710.47310.47310.473
observation->Wnspage->2004                              7.1547.1547.1407.1547.1547.154
observation->Wnspage->2006                              9.5909.5909.5519.5909.5909.590
observation->Wnspage->2007                              10.86010.86010.82210.86010.86010.860
observation->Wnspage->2008                              12.42212.42212.43512.42212.42212.422
observation->Wnspage->2009                              14.71914.71914.79014.71914.71914.719
observation->Wnspage->2010                              11.40511.40511.37011.40511.40511.405
observation->Wnspage->2011                              11.26511.26511.27511.26511.26511.265
observation->Wnspage->2012                              10.45310.45310.46510.45310.45310.453
observation->Wnspage->2013                              13.63413.63413.63413.63413.63413.634
observation->Wnspage->2014                              12.60912.60912.59712.60912.60912.609
observation->Wnspage->2016                              15.68315.68315.72215.68315.68315.683
observation->CRsumage->1992                              15.57015.57015.56615.57015.57015.570
observation->CRsumage->1993                              10.61310.61310.62410.61310.61310.613
observation->CRsumage->1994                              18.17418.17418.13018.17418.17418.174
observation->CRsumage->1995                              14.28714.28714.24214.28714.28714.287
observation->CRsumage->1996                              11.56611.56611.60711.56611.56611.566
observation->CRsumage->1997                              15.75015.75015.68815.75015.75015.750
observation->CRsumage->1998                              14.68614.68614.69014.68614.68614.686
observation->CRsumage->1999                              12.06112.06112.08412.06112.06112.061
observation->CRsumage->2000                              14.32614.32614.28314.32614.32614.326
observation->CRsumage->2001                              19.65119.65119.52019.65119.65119.651
observation->CRsumage->2002                              10.97110.97110.96010.97110.97110.971
observation->CRsumage->2003                              11.25411.25411.21011.25411.25411.254
observation->CRsumage->2004                              9.5569.5569.5619.5569.5569.556
observation->CRsumage->2005                              12.74912.74912.65412.74912.74912.749
observation->CRsumage->2006                              10.31710.31710.31710.31710.31710.317
observation->CRsumage->2007                              13.56113.56113.50413.56113.56113.561
observation->CRsumage->2008                              11.66511.66511.63911.66511.66511.665
observation->CRsumage->2009                              12.00212.00211.96512.00212.00212.002
observation->CRsumage->2010                              11.05211.05211.05511.05211.05211.052
observation->CRsumage->2011                              12.57712.57712.57112.57712.57712.577
observation->CRsumage->2012                              17.23017.23017.14117.23017.23017.230
observation->CRsumage->2013                              11.84511.84511.82211.84511.84511.845
observation->CRsumage->2014                              11.28811.28811.27111.28811.28811.288
observation->CRsumage->2016                              9.8679.8679.8479.8679.8679.867
observation->CRsumage->2018                              11.93511.93511.89511.93511.93511.935
observation->SAsumage->1992                              12.24112.24112.26912.24112.24112.241
observation->SAsumage->1993                              12.48312.48312.50212.48312.48312.483
observation->SAsumage->1994                              10.80810.80810.81810.80810.80810.808
observation->SAsumage->2001                              12.76212.76212.83912.76212.76212.762
observation->SAsumage->2002                              12.21612.21612.25412.21612.21612.216
observation->SAsumage->2003                              13.38813.38813.38613.38813.38813.388
observation->SAsumage->2004                              11.06411.06411.00511.06411.06411.064
observation->SAsumage->2005                              15.28015.28015.38615.28015.28015.280
observation->SAsumage->2006                              14.11014.11014.07814.11014.11014.110
observation->SAsumage->2007                              10.64910.64910.63910.64910.64910.649
observation->SAsumage->2008                              13.76613.76613.83613.76613.76613.766
observation->SAsumage->2009                              15.52015.52015.53015.52015.52015.520
observation->SAsumage->2010                              15.08215.08215.13015.08215.08215.082
observation->SAsumage->2012                              13.43913.43913.47913.43913.43913.439
observation->SAsumage->2013                              11.95611.95611.98211.95611.95611.956
observation->SAsumage->2015                              13.52413.52413.54013.52413.52413.524
observation->SAsumage->2017                              12.48712.48712.47812.48712.48712.487
observation->SAautage->1992                              11.81911.81911.85711.81911.81911.819
observation->SAautage->1996                              10.45010.45010.42610.45010.45010.450
observation->SAautage->1998                              12.81012.81012.83512.81012.81012.810
observation->pspawn_1993                              -6.016-6.016-6.015-6.016-6.016-6.016
observation->pspawn->1992                              -4.852-4.852-4.829-4.852-4.852-4.852
observation->pspawn->1998                              -8.291-8.291-8.300-8.291-8.291-8.291
penalty->CatchMustBeTaken                              0.0000.0000.0000.0000.0000.000
prior->CSacousq->catchability[CSacous].q                            -0.847-0.847-0.839-0.847-0.847-0.847
prior->WCacousq->catchability[WCacous].q                            -1.163-1.163-1.202-1.163-1.163-1.163
prior->CRsumq->catchability[CRsum].q                            -2.153-2.153-2.207-2.153-2.153-2.153
prior->SAsumq->catchability[SAsum].q                            -1.760-1.760-1.557-1.760-1.760-1.760
prior->SAautq->catchability[SAaut].q                            -1.911-1.911-1.762-1.911-1.911-1.911
prior->CR_process_error->observation[CRsumbio].process_error                0.0000.0000.0000.0000.0000.000
prior->SA_process_error->observation[SAsumbio].process_error                0.0000.0000.0000.0000.0000.000
prior->B0_E_with_total_log_b0_prior->parameter_transformation[log_sum_b0].log_total_parameter          0.0000.0000.0000.0000.0000.000
prior->B0_W_with_proportion_prior->parameter_transformation[log_sum_b0].total_proportion_parameter   12.54512.54512.55512.54512.54512.545
prior->M_all->process[Instant_mortality].m{west.sa}                          -1.083-1.083-1.217-1.083-1.083-1.083
prior->Wspsl_shift_param->time_varying[shifted_mu].a                            0.4220.4220.3780.4220.4220.422
prior->YCS_E->process[recruit_E].recruitment_multipliers{1977}-0.624-0.624-0.623-0.624-0.624-0.624
prior->YCS_E->process[recruit_E].recruitment_multipliers{1978}-0.314-0.314-0.319-0.314-0.314-0.314
prior->YCS_E->process[recruit_E].recruitment_multipliers{1979}-0.225-0.225-0.238-0.225-0.225-0.225
prior->YCS_E->process[recruit_E].recruitment_multipliers{1980}0.6560.6560.6150.6560.6560.656
prior->YCS_E->process[recruit_E].recruitment_multipliers{1981}0.0860.0860.0620.0860.0860.086
prior->YCS_E->process[recruit_E].recruitment_multipliers{1982}-0.630-0.630-0.627-0.630-0.630-0.630
prior->YCS_E->process[recruit_E].recruitment_multipliers{1983}-0.619-0.619-0.623-0.619-0.619-0.619
prior->YCS_E->process[recruit_E].recruitment_multipliers{1984}-0.551-0.551-0.542-0.551-0.551-0.551
prior->YCS_E->process[recruit_E].recruitment_multipliers{1985}-0.627-0.627-0.630-0.627-0.627-0.627
prior->YCS_E->process[recruit_E].recruitment_multipliers{1986}-0.591-0.591-0.596-0.591-0.591-0.591
prior->YCS_E->process[recruit_E].recruitment_multipliers{1987}-0.641-0.641-0.642-0.641-0.641-0.641
prior->YCS_E->process[recruit_E].recruitment_multipliers{1988}-0.408-0.408-0.400-0.408-0.408-0.408
prior->YCS_E->process[recruit_E].recruitment_multipliers{1989}0.1420.1420.1350.1420.1420.142
prior->YCS_E->process[recruit_E].recruitment_multipliers{1990}0.0250.0250.0190.0250.0250.025
prior->YCS_E->process[recruit_E].recruitment_multipliers{1991}-0.631-0.631-0.632-0.631-0.631-0.631
prior->YCS_E->process[recruit_E].recruitment_multipliers{1992}0.1590.1590.1580.1590.1590.159
prior->YCS_E->process[recruit_E].recruitment_multipliers{1993}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_E->process[recruit_E].recruitment_multipliers{1994}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_E->process[recruit_E].recruitment_multipliers{1995}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_E->process[recruit_E].recruitment_multipliers{1996}-0.531-0.531-0.525-0.531-0.531-0.531
prior->YCS_E->process[recruit_E].recruitment_multipliers{1997}-0.534-0.534-0.538-0.534-0.534-0.534
prior->YCS_E->process[recruit_E].recruitment_multipliers{1998}-0.573-0.573-0.577-0.573-0.573-0.573
prior->YCS_E->process[recruit_E].recruitment_multipliers{1999}-0.623-0.623-0.622-0.623-0.623-0.623
prior->YCS_E->process[recruit_E].recruitment_multipliers{2000}-0.511-0.511-0.513-0.511-0.511-0.511
prior->YCS_E->process[recruit_E].recruitment_multipliers{2001}2.0142.0142.0142.0142.0142.014
prior->YCS_E->process[recruit_E].recruitment_multipliers{2002}-0.616-0.616-0.614-0.616-0.616-0.616
prior->YCS_E->process[recruit_E].recruitment_multipliers{2003}-0.065-0.065-0.071-0.065-0.065-0.065
prior->YCS_E->process[recruit_E].recruitment_multipliers{2004}-0.542-0.542-0.545-0.542-0.542-0.542
prior->YCS_E->process[recruit_E].recruitment_multipliers{2005}-0.586-0.586-0.585-0.586-0.586-0.586
prior->YCS_E->process[recruit_E].recruitment_multipliers{2006}-0.568-0.568-0.568-0.568-0.568-0.568
prior->YCS_E->process[recruit_E].recruitment_multipliers{2007}-0.579-0.579-0.578-0.579-0.579-0.579
prior->YCS_E->process[recruit_E].recruitment_multipliers{2008}-0.483-0.483-0.482-0.483-0.483-0.483
prior->YCS_E->process[recruit_E].recruitment_multipliers{2009}-0.567-0.567-0.566-0.567-0.567-0.567
prior->YCS_E->process[recruit_E].recruitment_multipliers{2010}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_E->process[recruit_E].recruitment_multipliers{2011}-0.561-0.561-0.562-0.561-0.561-0.561
prior->YCS_E->process[recruit_E].recruitment_multipliers{2012}-0.031-0.031-0.046-0.031-0.031-0.031
prior->YCS_E->process[recruit_E].recruitment_multipliers{2013}-0.408-0.408-0.408-0.408-0.408-0.408
prior->YCS_E->process[recruit_E].recruitment_multipliers{2014}-0.019-0.019-0.023-0.019-0.019-0.019
prior->YCS_E->process[recruit_E].recruitment_multipliers{2015}-0.238-0.238-0.242-0.238-0.238-0.238
prior->YCS_E->process[recruit_E].recruitment_multipliers{2016}-0.317-0.317-0.314-0.317-0.317-0.317
prior->YCS_E->process[recruit_E].recruitment_multipliers{2017}-0.284-0.284-0.302-0.284-0.284-0.284
prior->YCS_E->process[recruit_E].recruitment_multipliers{2018}0.3640.3640.3730.3640.3640.364
prior->YCS_W->process[recruit_W].recruitment_multipliers{1977}-0.616-0.616-0.617-0.616-0.616-0.616
prior->YCS_W->process[recruit_W].recruitment_multipliers{1978}-0.195-0.195-0.184-0.195-0.195-0.195
prior->YCS_W->process[recruit_W].recruitment_multipliers{1979}-0.376-0.376-0.396-0.376-0.376-0.376
prior->YCS_W->process[recruit_W].recruitment_multipliers{1980}-0.397-0.397-0.417-0.397-0.397-0.397
prior->YCS_W->process[recruit_W].recruitment_multipliers{1981}-0.607-0.607-0.612-0.607-0.607-0.607
prior->YCS_W->process[recruit_W].recruitment_multipliers{1982}-0.568-0.568-0.573-0.568-0.568-0.568
prior->YCS_W->process[recruit_W].recruitment_multipliers{1983}-0.502-0.502-0.508-0.502-0.502-0.502
prior->YCS_W->process[recruit_W].recruitment_multipliers{1984}-0.606-0.606-0.607-0.606-0.606-0.606
prior->YCS_W->process[recruit_W].recruitment_multipliers{1985}-0.108-0.108-0.111-0.108-0.108-0.108
prior->YCS_W->process[recruit_W].recruitment_multipliers{1986}-0.161-0.161-0.163-0.161-0.161-0.161
prior->YCS_W->process[recruit_W].recruitment_multipliers{1987}-0.619-0.619-0.620-0.619-0.619-0.619
prior->YCS_W->process[recruit_W].recruitment_multipliers{1988}-0.097-0.097-0.098-0.097-0.097-0.097
prior->YCS_W->process[recruit_W].recruitment_multipliers{1989}0.7890.7890.7820.7890.7890.789
prior->YCS_W->process[recruit_W].recruitment_multipliers{1990}-0.251-0.251-0.255-0.251-0.251-0.251
prior->YCS_W->process[recruit_W].recruitment_multipliers{1991}1.2071.2071.2111.2071.2071.207
prior->YCS_W->process[recruit_W].recruitment_multipliers{1992}1.1981.1981.2041.1981.1981.198
prior->YCS_W->process[recruit_W].recruitment_multipliers{1993}-0.081-0.081-0.080-0.081-0.081-0.081
prior->YCS_W->process[recruit_W].recruitment_multipliers{1994}0.4800.4800.4800.4800.4800.480
prior->YCS_W->process[recruit_W].recruitment_multipliers{1995}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_W->process[recruit_W].recruitment_multipliers{1996}0.0140.0140.0200.0140.0140.014
prior->YCS_W->process[recruit_W].recruitment_multipliers{1997}-0.409-0.409-0.413-0.409-0.409-0.409
prior->YCS_W->process[recruit_W].recruitment_multipliers{1998}-0.301-0.301-0.306-0.301-0.301-0.301
prior->YCS_W->process[recruit_W].recruitment_multipliers{1999}-0.467-0.467-0.471-0.467-0.467-0.467
prior->YCS_W->process[recruit_W].recruitment_multipliers{2000}-0.323-0.323-0.334-0.323-0.323-0.323
prior->YCS_W->process[recruit_W].recruitment_multipliers{2001}2.0142.0142.0142.0142.0142.014
prior->YCS_W->process[recruit_W].recruitment_multipliers{2002}-0.643-0.643-0.643-0.643-0.643-0.643
prior->YCS_W->process[recruit_W].recruitment_multipliers{2003}0.8550.8550.8460.8550.8550.855
prior->YCS_W->process[recruit_W].recruitment_multipliers{2004}-0.222-0.222-0.222-0.222-0.222-0.222
prior->YCS_W->process[recruit_W].recruitment_multipliers{2005}-0.612-0.612-0.612-0.612-0.612-0.612
prior->YCS_W->process[recruit_W].recruitment_multipliers{2006}-0.570-0.570-0.571-0.570-0.570-0.570
prior->YCS_W->process[recruit_W].recruitment_multipliers{2007}-0.574-0.574-0.576-0.574-0.574-0.574
prior->YCS_W->process[recruit_W].recruitment_multipliers{2008}-0.280-0.280-0.279-0.280-0.280-0.280
prior->YCS_W->process[recruit_W].recruitment_multipliers{2009}-0.438-0.438-0.436-0.438-0.438-0.438
prior->YCS_W->process[recruit_W].recruitment_multipliers{2010}-0.464-0.464-0.463-0.464-0.464-0.464
prior->YCS_W->process[recruit_W].recruitment_multipliers{2011}-0.514-0.514-0.508-0.514-0.514-0.514
prior->YCS_W->process[recruit_W].recruitment_multipliers{2012}0.0700.0700.0780.0700.0700.070
prior->YCS_W->process[recruit_W].recruitment_multipliers{2013}0.0300.0300.0430.0300.0300.030
prior->YCS_W->process[recruit_W].recruitment_multipliers{2014}-0.049-0.049-0.059-0.049-0.049-0.049
prior->YCS_W->process[recruit_W].recruitment_multipliers{2015}-0.488-0.488-0.490-0.488-0.488-0.488
prior->YCS_W->process[recruit_W].recruitment_multipliers{2016}1.7271.7271.7421.7271.7271.727
prior->YCS_W->process[recruit_W].recruitment_multipliers{2017}1.6841.6841.6871.6841.6841.684
prior->YCS_W->process[recruit_W].recruitment_multipliers{2018}0.3640.3640.3730.3640.3640.364
prior->sel_Whome->selectivity[sel_Whome].v{1}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{2}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{3}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{4}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{5}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{6}                         0.0000.0000.0000.0000.0000.000
prior->sel_Whome->selectivity[sel_Whome].v{7}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{1}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{2}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{3}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{4}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{5}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{6}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{7}                         0.0000.0000.0000.0000.0000.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{8}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{1}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{2}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{3}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{4}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{5}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{6}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{7}                         0.0000.0000.0000.0000.0000.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{8}                         0.0000.0000.0000.0000.0000.000
prior->Enspsl_mu->selectivity[Enspsl].mu                           0.0000.0000.0000.0000.0000.000
prior->Enspsl_s_l->selectivity[Enspsl].sigma_l                      0.0000.0000.0000.0000.0000.000
prior->Enspsl_s_r->selectivity[Enspsl].sigma_r                      0.0000.0000.0000.0000.0000.000
prior->Wnspsl_mu->selectivity[Wnspsl].mu                           0.0000.0000.0000.0000.0000.000
prior->Wnspsl_s_l->selectivity[Wnspsl].sigma_l                      0.0000.0000.0000.0000.0000.000
prior->Wnspsl_s_r->selectivity[Wnspsl].sigma_r                      0.0000.0000.0000.0000.0000.000
prior->Espsl_mu->selectivity[Espsl].mu                           0.0000.0000.0000.0000.0000.000
prior->Espsl_s_l->selectivity[Espsl].sigma_l                      0.0000.0000.0000.0000.0000.000
prior->Espsl_s_r->selectivity[Espsl].sigma_r                      0.0000.0000.0000.0000.0000.000
prior->CRsl_mu->selectivity[CRsl].mu                           0.0000.0000.0000.0000.0000.000
prior->CRsl_s_l->selectivity[CRsl].sigma_l                      0.0000.0000.0000.0000.0000.000
prior->CRsl_s_r->selectivity[CRsl].sigma_r                      0.0000.0000.0000.0000.0000.000
prior->SAsl_mu->selectivity[SAsl].mu                           0.0000.0000.0000.0000.0000.000
prior->SAsl_s_l->selectivity[SAsl].sigma_l                      0.0000.0000.0000.0000.0000.000
prior->SAsl_s_r->selectivity[SAsl].sigma_r                      0.0000.0000.0000.0000.0000.000
additional_prior->YCS.eq.16                           0.0000.0000.0000.0000.0000.000
additional_prior->sp.migr                         0.0090.0090.0130.0090.0090.009
jacobian->log_sum_b0                              0.0000.0000.0000.0000.0000.000
total_score                              1946.8001946.8001946.5401946.8001946.8001946.800

## [1] "CASAL base model convergence information"
## [1] "Minimiser achieved convergence after 627 quasi-Newton iterations using 696 objective function evaluations"
## [1] ""
## [1] "CASAL sensitivity 1 model convergence information"
## [1] "Minimiser achieved convergence after 648 quasi-Newton iterations using 723 objective function evaluations"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model convergence information"
## [1] "fmm: have converged: t = 6.97859e-07 f = 1946.8"
## [2] "Successful convergence in optimise"             
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model convergence information"
## [1] "fmm: have converged: t = 6.97859e-07 f = 1946.8"
## [2] "Successful convergence in optimise"             
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model convergence information"
## [1] "fmm: have converged: t = 9.30477e-11 f = 1946.54"
## [2] "Successful convergence in optimise"              
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model convergence information"
## [1] "[IMPORTANT] FMM: Small step size convergence"
## [2] "FMM: Small step size convergence"
## [1] "CASAL model warnings"
##                  parameter estimate lower.bound upper.bound
## 1   recruitment[E].YCS[25]     0.06        0.06         8.6
## 2   recruitment[W].YCS[25]     0.06        0.06         8.6
## 3 selectivity[CRsl].all[1]        1           1          17
## 4 selectivity[CRsl].all[2]        1           1          50
## [1] ""
## [1] "CASAL sensitivity 1 model warnings"
##                  parameter estimate lower.bound upper.bound
## 1   recruitment[E].YCS[25]     0.06        0.06         8.6
## 2   recruitment[W].YCS[25]     0.06        0.06         8.6
## 3 selectivity[CRsl].all[1]        1           1          17
## 4 selectivity[CRsl].all[2]        1           1          50
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [85] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [86] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [87] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [88] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [89] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [90] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [91] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [92] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [93] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [85] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [86] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [87] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [88] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [89] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [90] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [91] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [92] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [93] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [85] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [86] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [87] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [85] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [86] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [87] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [88] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [89] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [90] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [91] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [92] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [93] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [85] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [86] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [87] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [88] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [89] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [90] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [91] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [92] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [93] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model warnings"
##  [1] "obs sum total (1) for year (1989) doesn't sum to 1.0"                                                                                                                            
##  [2] "obs sum total (1) for year (1990) doesn't sum to 1.0"                                                                                                                            
##  [3] "obs sum total (0.999999) for year (1991) doesn't sum to 1.0"                                                                                                                     
##  [4] "obs sum total (1) for year (1994) doesn't sum to 1.0"                                                                                                                            
##  [5] "obs sum total (1) for year (1995) doesn't sum to 1.0"                                                                                                                            
##  [6] "obs sum total (1) for year (1996) doesn't sum to 1.0"                                                                                                                            
##  [7] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
##  [8] "obs sum total (1) for year (2000) doesn't sum to 1.0"                                                                                                                            
##  [9] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [10] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [11] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [12] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [13] "obs sum total (0.999999) for year (2005) doesn't sum to 1.0"                                                                                                                     
## [14] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [15] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [16] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [17] "obs sum total (0.999999) for year (2014) doesn't sum to 1.0"                                                                                                                     
## [18] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [19] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [20] "obs sum total (1) for year (1988) doesn't sum to 1.0"                                                                                                                            
## [21] "obs sum total (0.999999) for year (1989) doesn't sum to 1.0"                                                                                                                     
## [22] "obs sum total (0.999999) for year (1990) doesn't sum to 1.0"                                                                                                                     
## [23] "obs sum total (0.999998) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [24] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [25] "obs sum total (1) for year (1997) doesn't sum to 1.0"                                                                                                                            
## [26] "obs sum total (1) for year (1999) doesn't sum to 1.0"                                                                                                                            
## [27] "obs sum total (1) for year (2002) doesn't sum to 1.0"                                                                                                                            
## [28] "obs sum total (0.999999) for year (2003) doesn't sum to 1.0"                                                                                                                     
## [29] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [30] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [31] "obs sum total (0.999999) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [32] "obs sum total (0.999998) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [33] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [34] "obs sum total (1) for year (2015) doesn't sum to 1.0"                                                                                                                            
## [35] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [36] "obs sum total (0.999999) for year (1998) doesn't sum to 1.0"                                                                                                                     
## [37] "obs sum total (0.999999) for year (1999) doesn't sum to 1.0"                                                                                                                     
## [38] "obs sum total (1) for year (2001) doesn't sum to 1.0"                                                                                                                            
## [39] "obs sum total (1) for year (2004) doesn't sum to 1.0"                                                                                                                            
## [40] "obs sum total (1) for year (2005) doesn't sum to 1.0"                                                                                                                            
## [41] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [42] "obs sum total (1) for year (2008) doesn't sum to 1.0"                                                                                                                            
## [43] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [44] "obs sum total (0.999999) for year (2011) doesn't sum to 1.0"                                                                                                                     
## [45] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [46] "obs sum total (0.999998) for year (2016) doesn't sum to 1.0"                                                                                                                     
## [47] "obs sum total (0.999999) for year (1994) doesn't sum to 1.0"                                                                                                                     
## [48] "obs sum total (0.999999) for year (1996) doesn't sum to 1.0"                                                                                                                     
## [49] "obs sum total (0.999999) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [50] "obs sum total (1) for year (2003) doesn't sum to 1.0"                                                                                                                            
## [51] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [52] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [53] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [54] "obs sum total (1) for year (2011) doesn't sum to 1.0"                                                                                                                            
## [55] "obs sum total (0.999999) for year (2012) doesn't sum to 1.0"                                                                                                                     
## [56] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [57] "obs sum total (1) for year (1992) doesn't sum to 1.0"                                                                                                                            
## [58] "obs sum total (0.999999) for year (1995) doesn't sum to 1.0"                                                                                                                     
## [59] "obs sum total (0.999998) for year (2002) doesn't sum to 1.0"                                                                                                                     
## [60] "obs sum total (0.999999) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [61] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [62] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [63] "obs sum total (1) for year (2009) doesn't sum to 1.0"                                                                                                                            
## [64] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [65] "obs sum total (1) for year (2013) doesn't sum to 1.0"                                                                                                                            
## [66] "obs sum total (1) for year (2016) doesn't sum to 1.0"                                                                                                                            
## [67] "obs sum total (1) for year (2018) doesn't sum to 1.0"                                                                                                                            
## [68] "obs sum total (0.999999) for year (1992) doesn't sum to 1.0"                                                                                                                     
## [69] "obs sum total (0.999999) for year (1993) doesn't sum to 1.0"                                                                                                                     
## [70] "obs sum total (0.999999) for year (2001) doesn't sum to 1.0"                                                                                                                     
## [71] "obs sum total (0.999998) for year (2004) doesn't sum to 1.0"                                                                                                                     
## [72] "obs sum total (0.999999) for year (2006) doesn't sum to 1.0"                                                                                                                     
## [73] "obs sum total (0.999998) for year (2007) doesn't sum to 1.0"                                                                                                                     
## [74] "obs sum total (0.999999) for year (2008) doesn't sum to 1.0"                                                                                                                     
## [75] "obs sum total (0.999999) for year (2009) doesn't sum to 1.0"                                                                                                                     
## [76] "obs sum total (0.999999) for year (2010) doesn't sum to 1.0"                                                                                                                     
## [77] "obs sum total (0.999999) for year (2015) doesn't sum to 1.0"                                                                                                                     
## [78] "obs sum total (1) for year (2017) doesn't sum to 1.0"                                                                                                                            
## [79] "obs sum total (1) for year (1998) doesn't sum to 1.0"                                                                                                                            
## [80] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"                                                                   
## [81] "Found an @estimate block for selectivity[Wspsl].mu. There are only a few time-varying types such as exogenous where this is okay. Please check this is a sensible configuration."
## [82] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [83] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [84] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [85] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [86] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [87] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"                                                                                               
## [88] "estimated parameter 'process[recruit_E].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [89] "estimated parameter 'process[recruit_W].recruitment_multipliers{2001}' was within 0.001 of lower bound 0.06"                                                                     
## [90] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [91] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"                                                                                            
## [92] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"                                                                                                    
## [93] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"

1.5 Matching of outputs

Time series comparisons with CASAL base model results

## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""

Derived quantities

SB0, SBcurrent, MSY, F_MSY, others...

1.6 Plots

Comparison plots

## [1] "CASAL base parameter correlation range (excluding 1.0): -0.943 0.9969"

## [1] "CASAL sensitivity 1 parameter correlation range (excluding 1.0): -0.9392 0.9969"

## [1] "Casal2 betadiff_casal_flags_on parameter correlation range (excluding 1.0): -0.960603 0.996694"

## [1] "Casal2 betadiff_casal_flags_off parameter correlation range (excluding 1.0): -0.960603 0.996694"

## [1] "Casal2 betadiff_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.936217 0.996741"

## [1] "Casal2 adolc_casal_flags_on parameter correlation range (excluding 1.0): -0.889925 0.996766"

## [1] "Casal2 adolc_casal_flags_off parameter correlation range (excluding 1.0): -0.889925 0.996766"

## [1] "Casal2 adolc_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.889995 0.996968"